Scaffold GBIDBA_10024644

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10024644
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5458
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F005749	Metagenome	391	Y
F013775	Metagenome	268	Y
F051054	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1002464417	F051054	AGGA	MRTIKLTTFNDLGDCDRQDVNDLISALVRVGYEVWMADHSVCFNLGNEDVIKDEKGINNNEKY*
GBIDBA_100246442	F013775	AGTAGG	MVEKRKYETIKEFAKDYRTEIIPMLKSKGFTLSINTSKGSFYQDGRMNFVIKKIPSNFYVWTNEYSRYNKTEKSQKLLNTIRDRVKNLIAVTTDLDVDLNFDYHRDVRYEPIPEGWDDEQNS*
GBIDBA_100246445	F005749	AGGAG	MKKSWLLTMSFDEHDGSPNDIKTLYHGRTKRSMEKDMNLFQDMNEHLVLTLVEIDKKSTYDKIIDKEDSEEMFFMDSKSNWNNGKTYEELKEEVLEEMLMGSLINGDMGYA*
GBIDBA_100246449	F003091	AGGAG	MSMLPRKPITKPDEGKERQKYVSQERYLEERYQISVGLKGPKRLEGEEFEDYKLRMKAENGLLHEYLRGVWMADGKCTALTPEPCVNCE*