Scaffold GBIDBA_10023321

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10023321
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2818
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044592	Metagenome	154	Y
F086310	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1002332110	F086310	GAGG	VKVGDLVKHFLTEQIGIVVDVSCNRDSRNIAPVQVMWTTQGESLFGPGNKEWCGENQLEHLTTA*
GBIDBA_100233217	F044592	GGTGG	MKVGDLVRYKGSVGIVTGPVRKRWAKPADVWVLWNHHHKPIIESGDFLELINASR*