Scaffold GBIDBA_10022833

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10022833
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2864
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028833	Metagenome / Metatranscriptome	190	Y
F038414	Metagenome	166	Y
F041248	Metagenome / Metatranscriptome	160	Y
F049706	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100228333	F049706	N/A	MKRLDEVLKQYSVVKVADGNGAHHGADYEEMKQVILDSLFTSYLGETIRK*
GBIDBA_100228334	F028833	N/A	MSNLTYLWSQGMIDTIAKKVAEEPMENVDERPQHVIDEERGDAIRQWRKEQAQLEMFNDPVMNWSGLR*
GBIDBA_100228335	F041248	N/A	MNQQKRARQEGAIERTKASILVYEEKLKSCKDDTEKKLLKKKIERAQTTISNTKII*
GBIDBA_100228337	F038414	GAG	MTRKEQRNNTINEFYKKRTSPKTLQIQASKTASSKAEWLHISTSVVDGEGQGTYDVGSRAMKRERLADKKLRAKQANLR*