Scaffold GBIDBA_10022561

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10022561
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2890
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018265	Metagenome / Metatranscriptome	236	Y
F018553	Metagenome / Metatranscriptome	234	Y
F028526	Metagenome / Metatranscriptome	191	Y
F028833	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100225611	F028526	GAG	MEDYLGGIKTKPELFLKLTKRISRPEYTMNFMEDRNGRKAMFYNYKGPEFDEGDCVLLKATIAEHRLDKYERGKPLTYLNRVT
GBIDBA_100225613	F028833	AGAAGG	MFNVDKIAEKVANEPMEDIQEEVVPQHVIDEERADMIKERRKELAQMEMYDDPYLNWSGHR*
GBIDBA_100225616	F018553	GAG	MLCSNRLRIAILNEEISLWEKRLYDNPDDIPYLGYIRTTLRDRVKELKKEEEKT*
GBIDBA_100225617	F018265	GAG	MSMEIHTLRAVKITQNIFELRKVNREIERVSKIMELLEIRKTRLENVM*