Scaffold GBIDBA_10022327

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10022327
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2912
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034604	Metagenome	174	Y
F049706	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100223271	F049706	N/A	YDMKFEKDHPYMKRLDEVLKQFLVVKVEDIEEVERGEDSEDYEEMKQVILDSLFTNYLGNTIRK*
GBIDBA_100223273	F034604	N/A	MIKEVEIDGENIIIDFEGAPFWKYYVLQLVFMIFYRKKMVDYDDCC*