Scaffold GBIDBA_10017287

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10017287
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5962
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014551	Metagenome	262	Y
F047110	Metagenome	150	Y
F077389	Metagenome / Metatranscriptome	117	Y
F089413	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1001728710	F047110	N/A	MKNNKMKTIVSMNWRIKDLILNKLSFEKWHLDVFGAAASKKVLNKIKEKESELKQMKAAA
GBIDBA_100172874	F089413	N/A	MREKTQTNLRNQGNAIAEVRGALQILAIDNLVGKENIQARIMHWEAKLTDVQNKLTEAEFSEPIEKSDI*
GBIDBA_100172876	F014551	GAG	MRDMFKFQYNPAVHEGQVNRAGLVFDYLGVIVDHFRNTTEGETFSGVTVEIHDNQGPTGQTRRFRWDRMVKAINIVNTAQAMHGGRI*
GBIDBA_100172879	F077389	N/A	MKEIKNYKEKMLRYYYAPVIGFALVLAIVCGFVIGFDEVWRYWRVVALNF*