Scaffold GBIDBA_10015527

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10015527
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3865
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012400	Metagenome	281	Y
F024571	Metagenome	205	Y
F041753	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100155273	F012400	AGGAGG	MKYRVLKYNGDDIYSWAVFRAQDVKGMRSPIFYGDAEPVVDGCSRSEANHYKTMLEKKAAA*
GBIDBA_100155276	F041753	AGGA	MTNYQVHFEKTTCKGIKRGIRTVKARNEFEAKLKVASVVAGSFGHWVNRLANEEAV*
GBIDBA_100155279	F024571	AGGAGG	MELNVDVIDNETGEIYREGVLLAVAHLFIAKEKGKIIRDEVDNIDLDDIDGGGRMEVRSIYVDFPEERRKRDLSAEAQVRARKFWQYENGGGQVRH*