Scaffold GBIDBA_10014133

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10014133
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4510
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012507	Metagenome	280	Y
F014672	Metagenome	261	Y
F016324	Metagenome	248	Y
F058454	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1001413310	F058454	GGAG	MDEQGDSMKVGDLVTYAFQAARWRKGQSVDVGLVVETGKYTGNADVKVLWMGPGAAAPYAITQKRDHLRLVDKSL
GBIDBA_100141333	F016324	GGTGG	MHSSVRRPPPRPPKIGDIVRLSGPGGMGRQYKRVHGVGIVTLIDKPENRRIEYEVKWLKSDERMRFNEEDLIVLSDVDR*
GBIDBA_100141334	F012507	N/A	MWTDKLKIGDLVWSKRDNKPALILDSEETARAKYGDLVTKRMRFKLHIDGEQGWLDEIKLRALYRLP*
GBIDBA_100141337	F014672	N/A	MNKFKPGDLVKIRDGTHSTEIPDHRLGMIIEHGDASGNYTEAYTVVFLGTDVHLKFHEMFLEHLTSS*