Scaffold GBIDBA_10012325

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10012325
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7541
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F006146	Metagenome / Metatranscriptome	380	Y
F010943	Metagenome	297	Y
F020372	Metagenome / Metatranscriptome	224	Y
F033079	Metagenome	178	Y
F042386	Metagenome / Metatranscriptome	158	N
F049706	Metagenome / Metatranscriptome	146	Y
F097522	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100123251	F010943	N/A	MIEKESLHDYLLNLKNKNSLDPNIAEYKRTIRKELAPYRARQPVTPLISHNTKTAKNVVFYSFMEAPNKPKIGEHEYKRLKLSWSSLRKHNDQIEIRFCYSERINLFRDPESTLGKDRDDSLYDKWASLCEDYGVEMYPFHESFIGNEPNAWCIHRWYNLALWENEDLNILYLDADTWINGDVQLLFDIYSRDPIYGREELGFRHDPNLGVSGEDPRFYLDLVDASIMAQGGVSEVQKYCLGVILLNRSTHRLFTPEVLTYYTDLLKRIHTFKVFYSIPNYRIMDEFAFWVLLSRWGLRTSLFGDQDVSQTFMERKHENHFNPIV
GBIDBA_1001232511	F049706	AGGA	MKFKEDHPYMIKLDETLKQYSIVKVADGNGAHHGADYQEMKQVILDALFTSYLGETIRK*
GBIDBA_1001232512	F020372	AGGAG	MTDENKATVRIYIDGKEMLYSHQNMVAAINSFLPYLTNDDLTELMKTFHTTKDHRRQKEYLSKLETLKHSWPYPDTIKQ*
GBIDBA_1001232513	F042386	N/A	MNNAGLTTTYEEGEKGQFELFKDNASWMKEDARDGIPKFFTLEHVEKKLGGLGEY*
GBIDBA_1001232514	F004843	N/A	MKWILIIAIALSFSGCARDATAEDSTAVTPAEQSLERTTLAETNTEWIAIVMTWNPVTYTIDKEFSSEVNCWNYYDNGAGESKMLNSYGTQVLDHQGNKPDKDYMKKHRPPHREYPTRMYKNHGGWMVWLTCDMRSRHLEL*
GBIDBA_1001232516	F033079	GAG	VVIENKPIEISGNRLVWRHIQKENQRMMLDPLGYDPIRDIDEIHHRNRRKTDDPYIKATSEKLAHHFPEINDAERR*
GBIDBA_1001232519	F006146	N/A	MIIATTTLIIVQVVVVGCVLWLNPEPCPRKYRVTQEHGGVLANMSDIHRYCELDYGGKFILKDEYKED*
GBIDBA_100123257	F097522	N/A	MKKHNSIFKTLAELCYNKSVREEIEERVASKYLSRIDYLVGANNELMKELEQYEKVSMKEKV*