Scaffold GBIDBA_10011997

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10011997
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8493
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F009992	Metagenome / Metatranscriptome	310	Y
F022526	Metagenome	214	Y
F036420	Metagenome	170	Y
F097510	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100119971	F097510	N/A	MIKPFRIVWELIEFGLQALFIYVLVILIFIGVLFTIIHKEKNKEQEWNEAIKEAKIEYTKECTRIDGCRVRKDGTIEY*
GBIDBA_1001199711	F005103	N/A	MDDIEIRINKKTVPLSHQNMARAINSFLPYLTNIDLTELGQDILDLMNHREKKEAESRLEVEKHSWPYPDTIKKD*
GBIDBA_1001199714	F009992	GAG	MYNADIHGYNTDYPHDLGVVLGNGPSRDRDRKHYDGALTYGCNTIHKEMTVNVLVCMDAWYQFEVIASGYPAEHECLFGGWNPMPIEIPPDSLNPSHYDLYEYNPEDRKRADSWYYYATSAEDYERAVKENYTMPYWKPDCGYVCWATEGYIIKEVDYGVLPIGDLRPPSGAYALQEALRGGHDRVEVFGFDSIAGVFSTTSQITYNKHDIDDKKMIDDRLDKWMTFYKTVTEHYNKIEIIWHTKKD*
GBIDBA_1001199722	F036420	GAG	MKIKIHARNIDTKLRVALYAMTEFALARLIPSRRLRNNLSINIHLKHHAHGGEAMMSETTNPKRPREFKVIVDPHQAEIDNYNRTRTDTEWG
GBIDBA_100119979	F022526	GGAG	MGMNTKTVRVKEYRDYSRGGTPQERHMENVERGYTTSDTMTAVAVRYEVIEGKRYRVITL