Scaffold GBIDBA_10011082

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10011082
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4972
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017718	Metagenome / Metatranscriptome	239	Y
F052651	Metagenome / Metatranscriptome	142	Y
F075331	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100110823	F017718	GGAG	MTTQNYESSLDLVNERLKQIDDIMEKFSGFPDVQEKLQGARNALVESEEEIMTYYDLTSIEKYKKT*
GBIDBA_100110824	F052651	GGA	MDINKEYFSDKSEAEKLRNVSSLVDSIVNAKPEESLKVEAGVGEGDGIEEELPEVNPLVDLVGKAISKGRPKGFFMQGVQTDDNAKL*
GBIDBA_100110828	F075331	N/A	PSGRMVGGDSELSEWNAWDEQVVNEIKIEKIHTFNTAKREADWVKDSVIPRLGRISHKHWKSAEELSTYITQVADAEVRTFAGWARKK*