Scaffold GBIDBA_10010968

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10010968
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7526
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005149	Metagenome / Metatranscriptome	410	Y
F077804	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1001096811	F077804	GAG	MKIELPNNKYIIYERDILDILIAFNSGNYEWVLDFFESLTPIDNFDNQKTYTFEQVIANAGIVSCKKR*
GBIDBA_100109683	F005149	N/A	MTMKTKCLLCTAVTYPGHHFYDHLEDVHMMPIRRQRIAAVGIDKYDQEKGLVVEETNDECMERFKFTHKEYGTEICWCPDCIGGETLDMVSKVCETHGELYVKGKHRLYVDKR*