NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBIDBA_10010270

Scaffold GBIDBA_10010270


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10010270 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7351
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007550Metagenome / Metatranscriptome349Y
F011494Metagenome / Metatranscriptome290Y
F015147Metagenome / Metatranscriptome257Y
F015789Metagenome252Y
F091857Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
GBIDBA_1001027013F015147GGAGMRKTTKNIKWLVNDLGLNELDAWLSIIGGSALTAAILVMLSGNGPEIFRYWRVFLLNL*
GBIDBA_1001027014F011494N/AVLLGVDFSPVSDILFSVMRKYSVVDEEGVVQEFVQSVGEHDHAALNDAIELAGRAGEDVVEHLADGGRVVVWELAGEEPWEGEDRFADGDALASAGHGTDEDYGWGGDEALCGE*
GBIDBA_1001027018F007550GAGMKKIISLLLLVGAVSANAASLELKVKQQKTLPNGNAYGLESGIYFELTDLEPFVMYKLQYSEDLKNWTDLVHLGTYKMAMTSPYWTWKELPPYQCFFRIVVAW*
GBIDBA_1001027022F091857N/AMKKIICLVGAVCLAGCVVTEKEVVYKKISFADKEGVTTLYYPPTWQKHLKPIDDGTPKTMLVRFGQALNATK*
GBIDBA_100102703F015789N/AMNLMLAFSANCAILFPVSERNMKDKSMKEKTVKVKGPWVDGVQTVKEISLEEWTSYTPLNTRVKGQWFRVVKW*
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