Scaffold GBIDBA_10010204

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10010204
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5628
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010829	Metagenome / Metatranscriptome	298	Y
F045695	Metagenome / Metatranscriptome	152	Y
F061900	Metagenome / Metatranscriptome	131	N
F062149	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1001020412	F061900	GGAG	MTDSSSEEENDMAMVGELMEAKMALGQARGQMTHMLRMGNFHLEIVPNKDIDVEKFFTSTMNNIWERFGKDALEVKVSGMEGMKPKDDRGMHQ*
GBIDBA_1001020414	F045695	AGGA	MRDKRQLFLNIWNKKNCSTKDSIKAKLNNRGVEPTELNCYEYWMGYIRPWADSRGNIKHVNPFRNEAFMRSIGRNKYGTPFRVANGNKKKKRKFRK*
GBIDBA_100102044	F062149	AGGAG	VTEITDKDLAAEQRERWIRLLRAGYMFHQQEVKETTNPIIGAESSDINLFHQAVSVAIQDCIELIQEMEALGYFEEAHLSTPGMAG*
GBIDBA_100102048	F010829	GAG	MGNLADHRRLREAQGLYKEDPGAGKYTKDELNYIPFLGNNPSDEKPAVYTARFRVTGGVIELEAKRSGGKLYITCLADEKHNRAIFECVERFVAAIFDGTAREISEAQPDDSEMMKLKKHIDQLEKENEEHIETLLQLKKIMK*