Scaffold GBIDBA_10009801

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10009801
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7313
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (36.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F011494	Metagenome / Metatranscriptome	290	Y
F014551	Metagenome	262	Y
F047110	Metagenome	150	Y
F062165	Metagenome	131	N
F077389	Metagenome / Metatranscriptome	117	Y
F081424	Metagenome	114	N
F089413	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000980110	F077389	N/A	MKEIKNYKEAMFRYYYAPMIGVWLTVAIVCGFVIGFDEVWRYWRVVGLNF*
GBIDBA_1000980112	F014551	GAG	MRDMFKFQYNPAVHEGQVNHGNHVFDYLGVIVDKFENQTEGETCSGVTVELYDNEGPTGQTRRFRFDRMIGAENLINKAQAMHGGRI*
GBIDBA_1000980114	F062165	GAG	MRDKTIFKLTWKDEDSNRVSSREFENEKGVDHSGSMAALNLAQQADNNGWPWIIEKNDETMCHGNGGDLLDRGRLFPTCG*
GBIDBA_1000980119	F007550	N/A	MKKIIFFLLVCIASANAASLELKVKQQKVLPNGNAYGLESGIYFELTDLEPFIMYKLQYSEDLDKWTDLVHLGTYKMAMTSPYWTWNELPPHQCFFRIVVAW*
GBIDBA_1000980121	F089413	N/A	MRNTTQTHIRNQGVAIAEVRGALQILAQTNLVGKENIQERLKHWEAKLTDIQNKLTEIEWSESIEWLEDKAGIEA*
GBIDBA_100098014	F081424	N/A	MRDRIELEEVFEADPQARAEFNAVCDQWQDEAIIAQDKEVCWCKPFESCSLCFCRA*
GBIDBA_100098017	F011494	N/A	MRKYSVVNEEGVVEEFVQLVGEADHSALNDAIELAGRAGEDVVEHLADGSRVVVWEMGGEEPWEGEDRFADGDALASAGFGTDEDYGCFDAGDEW*
GBIDBA_100098019	F047110	N/A	MKNNKMKTVVSINWKIKDLIRNKLSFQKWHKTVFGVDATRKVLSKVKADAKELAEMKQAMLLAATD*