NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBIDBA_10008699

Scaffold GBIDBA_10008699


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10008699 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5996
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F034394Metagenome175Y
F042629Metagenome158Y
F053638Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
GBIDBA_100086992F016619N/AMAITIAQNSDHKSLTGKTLSVQAELTSKLKSCVVDVTYGASDTYTTGGNTVDLSLGGRIKTVIGAQILHSNAGLLLQYVPAAAGAAATGKIKAYGQEPTSATATVVALTELDSSDTAVNSLTIRIRVFGF*
GBIDBA_100086994F034394N/AMVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIVRKEAELDRRIGHTWKTKKITREIHSLPLLYTFGWGTPIFLKHRHILTLDSSLGDKIEVWKSETDDWGNILDSTQWYNMEYEFGTLFLRGYLFTILRNNRVRVTYRYGGEDYAGDTTVPLDIADCIIKMTAIEVMNTSFRMDEIPSGGSVSPSESKRFWQEDIDLCVSNRREVFVLP*
GBIDBA_100086996F042629N/AMAIITYDAVDDIIDLLRTKWSSLRPPHITKVWEKRTVGFIDDRSDEIIISPKGENIQYFGLGGSSFWHEQIMELDIRTYQDVDRHNKVVKEIVKIIKDNIVGTTYTDLRVIGSFSRNFQFRNMFNYVITISYRKSDPI*
GBIDBA_100086998F053638N/AMTLIPIEIMYGGKKEIIEFEDSLTFGDTEMLIGNSVDLSDVTKPKIDLQNYRLNLLALTIKKAPFKTGDITAIKMTDAKVIKSILKEIVKVHPLTSYIEDWMETFISSEELNKLDTQSTTTVPASSDGIKKRSISKK*
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