Scaffold GBIDBA_10006830

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10006830
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8428
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015849	Metagenome / Metatranscriptome	251	Y
F049926	Metagenome / Metatranscriptome	146	Y
F065101	Metagenome / Metatranscriptome	128	N
F074769	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000683010	F074769	GGAG	MANLAESRREREKAGKLIHQGEVGIISKDEMMFIPFIQSGNPDEERPWLYKGYYRMPDGEIGMECKRMKGNVEITINSAENYKEYIGKAVGEFISRVYKESPHEAKTISTEKHDTETDILKKEIMRLQLDVENAKKAKEEFEGILKSL*
GBIDBA_1000683013	F049926	GGAG	MKTPEAGTTLGKCTFCKDFIVEGAGNRAKHATVKSGHWMCGDCVIGMKDTVLNAFLDYHKQADEEREVLLAQVRKYGWAVDPDTGKLRKL*
GBIDBA_1000683016	F065101	AGG	MKQIGTVKRIDQYERVYVPKQIMEALGLEKESGHCVWVETEHGFMLKKANVEIEE*
GBIDBA_100068306	F015849	AGGAG	VTGIIDNSTDDARKRWCELLHAGWMFHQQQVKDGSSPIIGAELSDEQLFHMSVSVAIQDAIALIQQMEAYGYFADNKGEDEMSRAGPAG*