Scaffold GBIDBA_10005871

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10005871
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8910
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y
F072848	Metagenome / Metatranscriptome	121	Y
F081741	Metagenome / Metatranscriptome	114	Y
F086307	Metagenome / Metatranscriptome	111	Y
F102085	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000587115	F086307	AGG	MAAASAIRDLLLLLHEEWLDEDRKVVIKNMLAEIIDKMEDSVNMEDLR*
GBIDBA_1000587116	F072848	GGAGG	MVDSNFVSNEKISSGFDILDEAMAKVVNDLHLNFYEILTILSMMDTKVKQNNISQYLIETVTRFQEQINKEDEKLYYMCCLWS*
GBIDBA_100058713	F081741	AGG	MIDPLLAIVIATVSGAILNTIRGYLGSDSQYDIRKLLGAVIVSGFAGIAIAQTIALSGVDTLGLILIGLTAGFSIDYAVSKAKKVVEE*
GBIDBA_100058714	F060433	N/A	MERLFTSLIEPILLTLMIAVGGGVYTFFRRVSKTQQDLCDKVTMLQKTLIILAKAVDRQSNRLHPDEANSELDGLVKELLDK*
GBIDBA_100058715	F071758	N/A	MDEHCKKCKIIKYGYTDGVHSIYLCFKCGRYEGISGGDKSFINEINSDPMALLFMIKEKILIPIS*
GBIDBA_100058716	F102085	N/A	MATSIHIFENLDMFNKIYGSNVDDIEHKMPIIDLYVKNDKLWIVTNSNDMKEQPRLSRSIVHFRRGSADEWKEGDEKLVIHGKLQFNFDKNQLEFFPRFLRKPLLSMRVGRYFGDYVKKCKINYDRRYYDFKNDRMLFILEDKDEI*
GBIDBA_100058718	F001235	GGA	MPTELNTNENANSMTKKLWEKHQGDEYTKVSNYKEAVCLGCMKVDVAAATIADICGDCASKKGREPLLAKVCDKYYGLCFFCSKYKFHIEQVNGRFCQTCHGRIAKVTKEYNEKGGFMKADPFWISLRKKHGKDFKKLMGGNNHSNRR*