Scaffold GBIDBA_10005165

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10005165
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52698
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (24.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F017299	Metagenome / Metatranscriptome	241	Y
F079928	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000516516	F000352	AGG	MKTIKLTEGDATFVHYVLRMYAQQTPGLDSDDKAEIKEVAAKFK*
GBIDBA_1000516520	F017299	GAG	MNKIEPTKITLEYYNKKISTEVDHSDVTLEKLHDMWMEIVRAMGYHENTIKEFYE*
GBIDBA_100051657	F079928	N/A	MTKIPTLYDKLKPRVRAKLKENEGKYSSSIRQVIATLESTYFVQDLTVGELRRVHLFSDTDYVNQTALSIIWGDEIFDDYEGND*