Scaffold GBIDBA_10004962

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10004962
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9382
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027831	Metagenome	193	Y
F032237	Metagenome / Metatranscriptome	180	Y
F057364	Metagenome / Metatranscriptome	136	Y
F077161	Metagenome / Metatranscriptome	117	N
F090238	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000496210	F090238	GAGG	MHFHVEDNDDSFGEYHSHDGTVDIWLGGHLTEWALYDTIIHEELHRIIEENCPNSTTEKQDHWVIQRLCF*
GBIDBA_1000496211	F077161	GGA	VRELTLEQLQTRFDLHQKLHRFEVDKLFSDVKHKKFTEIQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDIVTEKIEHVQDSMTKKDIQQAVDKQTFNFDCRLLKTLSWNMKQAHHVVGHFSTKFDNPYFRSRCLFTNQESLIPDYGYQFYGDTWRMMKTTLKAKRNTLKNFIRITGGKDEKTFVDLKYWYITHFKDHKLWEKAMGYILDHCVKDVRMTYLGLRKAELFNNIGRAKA*
GBIDBA_1000496218	F027831	GGA	LGRGKQSGIAFGQRTKQKGQSDLEQLVMLKRFLKSRFHMDFKREWYVGFDKEYGNVCRVSREVGRKELERFKWKNPDLLCIDKKLGFIIVELDGAIHDRKVRKTQERNALFRNAGIKLVVLNIADIKECGGTIKGKLEKEIIKIQKE*
GBIDBA_1000496220	F057364	N/A	MVKVEREDFEESFMVTLIFTDGNKGQEIQVFAWEADSIEASLKTLPLAAVMAFYNKSGKKTIKEW*
GBIDBA_100049627	F032237	N/A	MSEERNFIDKTTSLKTVERVKFSLKNFSKGSKIEISWAFNPEDSMHIDQFLELDPDKNNILTALQGFKTMVETTLGVKILTDE*