Scaffold GBIDBA_10003830

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10003830
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11446
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (29.17%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040325	Metagenome / Metatranscriptome	162	Y
F056888	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000383019	F056888	N/A	MNVSEVLDIKGSAENSKKLVVGDKITIQGFHIKTVDEVGAEVAEISTTEGLRHSFGKAIIGQAKSDYWVDVVEKCVAKDAADGLDAYIIEKEAEKTGRMMLCLSMFPPKA*
GBIDBA_1000383023	F040325	N/A	MARRKIGNSHTTICVTWEDKELFRKFAQFVKKTRTGNLYESDAVLFGKMLIHFKNGNEVGSTSNTTYPTKS*