Scaffold GBIDBA_10003591

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10003591
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15403
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003827	Metagenome / Metatranscriptome	466	Y
F005883	Metagenome / Metatranscriptome	387	Y
F025767	Metagenome / Metatranscriptome	200	Y
F078823	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000359112	F078823	AGGA	MDKRPDGPELEELHDAVMEVIDDYIDFEYSFTDGGRDFSCCEMDGNADEGDDLETLTMWEGEGLFEVTIERGYKQRGMEGDEYIYDMNYQGSSIEGDYDAYVTWLKKKWPGVYEEALNEWKLWNADRITDEDKAAIENG*
GBIDBA_1000359113	F003827	AGGCGG	MAEGIWGDWQVRLIAENMAEKRPKRVWFEDDKGTQEDYFTSLKSWSHITARQLYSMELEERQLIIFVHHLGIEHVGVETFDPQDKGRYSQQSDFKPHEGA*
GBIDBA_1000359116	F025767	N/A	MEYRMINPETGEAEDISCTVSDMEVLKQEGWLMIFTPNPNAIISGRDTSGQGGGHGTSDGWKDVLREIKKKNRGSTIDV*
GBIDBA_1000359125	F005883	N/A	MNIQVRGTSGMIYRSGHQIVLKNTETDKKIAVKVVQYDSMQGWLAESGDGDWLWYREHKQDSDSTDLQYWTYVKKVGT*