Scaffold GBIDBA

Basic Information
Taxon OID	3300001683 Open in IMG/M
Scaffold ID	GBIDBA_10003359 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001683 Open in IMG/M

Scaffold ID

GBIDBA_10003359 Open in IMG/M

Source Dataset Name

Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12717
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (28.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12717

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (28.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured marine virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.015833	Long. (^o)	-111.425	Alt. (m)	Depth (m)	1993
Location on Map

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Source Dataset Sampling Location

Location Name

Guyams Basin, Gulf of California, Pacific Ocean

Coordinates

Lat. (^o)

27.015833

Long. (^o)

-111.425

Alt. (m)

Depth (m)

1993

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F037175	Metagenome / Metatranscriptome	168	Y
F049294	Metagenome / Metatranscriptome	147	Y
F083376	Metagenome / Metatranscriptome	113	N
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000335911	F083376	AGG	MIRIYTDLETTNTIEALDLGRVLLGETKKYTVFIKNTDAEWPVHNIKIENTNPELRFEAPQTLQANEVKEVAVYWTPKLDSRKPLRTEFKFSGDIFIG*
GBIDBA_1000335916	F019751	N/A	MTRTRGPELSKDFHDYIFNQWMFFSENAYGIAEKINKSTELMSKFGKTTPAGVHYHIKQIEKEMESTISEDAMDTYIGEFMRARTGFEHDVADIQILMSHEKEKGLEDMDKDLYLKLARFRHEIKLDSFKMLQDSALPLQVKKLKIEREKLRPPKPIPEVIKTERTSE*
GBIDBA_100033596	F037175	N/A	MINYHTKHINKRFVNQTVLHTLANLSIRDLSGWLKKWDIHVWDLKDTNPLYFGHIITTSGQKINTNMPSGVTGKYRMDLYLHDSDNMFKARENSDRIMHETCHAILIGTPHFVYGVHDNINNRFKVNFWYWNKFRWSRFTLSIIDIRQFL*
GBIDBA_100033597	F049294	AGCAG	MAGNLRYYALGAYTGLIALWTSMGTIALNETTSIALLAPIAILIGADYIKHKQDAE*
GBIDBA_100033598	F090244	N/A	MDVEARIFEKLDKIEDRINDLCIRLSAMEAEYNSHIVDLQRQQDKKLKRRDYTLVVMALGLTTVEVLRTLGMI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold GBIDBA_10003359

Overview

Ecosystem & Geography

Associated Families

Sequences