Scaffold GBIDBA_10003140

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10003140
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22327
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (83.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001493	Metagenome	683	Y
F002715	Metagenome / Metatranscriptome	535	Y
F004439	Metagenome	438	Y
F004881	Metagenome / Metatranscriptome	420	Y
F012510	Metagenome	280	Y
F033079	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000314013	F001493	N/A	MKSFKGYLKEAPAWTESLSTMLFDLPRAGLIDVMIPLSPSIFKRVWPEPVRSTVFHLTDMDGVGKLKKMQGKKRSISAFYNIKDFILQGGIKTDGGYVVELEGDVLVAAPDDVSSQPDKSGRRWLVFGTIIREMGGGSKIKKMEKDIESLLVDILVKNDMGPYKKKLSQHELNKAWSYLGKSTGGKEKSIIIKDYINGMEKIMKKYSKQLHSIFTDYVDKRELIPDPDSGDTALWDEIVVNNFKVKKVHVTEEYGEGYQDDDDIEGFPFELYPDKN*
GBIDBA_1000314014	F004439	N/A	MKSFKGYLIERGTSLSDLIFLPRISEYNQLMIPISSSMYKRIWPDTLRATVFHTTDEKGVKKIAKLQGKKSQISAFFEMQSRYMEIGVATQGGVHSVLEMDADVLLSAKGDVMSHLDKSGRRWTSIRDLEETSRFVNFSKVLVDLEKMFAPLVAKYLARGEFQDYATVFQLWAMAKRKVDSKTMSLIIKDYMDGMEKVIKKNIKTFSDVMLGYAKKRSTDYSWDEQVVNNIKVKTAHFFKLKLLRGENSLSLEQQELIEFAESKGWKTKMWDAPIELEAYTRKVAKKELGK*
GBIDBA_1000314016	F012510	AGGAG	MKTFKTHIDELYKDYPGKGWVLGTKDEPKKLKDKDIIWRSKVHHYDDTVRSDNTRFIIVKNKGKFSMYAKSDKSGKIVFHFGDKPTLDDAKEFASIRKWQEKK*
GBIDBA_100031402	F033079	GAG	MKEIAGNRLVWRHIQRENQKMILDPLGYDAIKDIDEMHNRNRRSTDDPYLKATSDKISHRFPKIDDAERR*
GBIDBA_1000314026	F002715	GGA	MPEDDQLQSVKLEVGLLKNEVETRGKQIETLLSKLDLTTDKLSQLTVQIIKLNTRQEDYLRHTTSTSAEFKILHTRIGDLYDKQLIMQKEIEERIDRLDQYKSKLMGMIIVVGGFVGALVAATTGIFLKD*
GBIDBA_1000314028	F000245	GGAG	VKPFGTYLKETRLDDKLDKLVSKEIKKRKLAKFPVNATDDIKMRRGKPAFKFPSPNSDMMIHVFLRPMKGEKGMMAFNYQLEDK*
GBIDBA_100031404	F004881	GAG	MNKSYKECSNPNDPEDKSLCIIVQDDSPFDGAVIRYTTFKLVEQELTGDDIACQYEYEIEVPPHDIGMEISEEDGKAFEQRLGEWVIEIIQSQMDKHAAADRDNNTKKSTT*