Scaffold GBIDBA_10002922

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10002922
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30807
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (30.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006483	Metagenome / Metatranscriptome	372	Y
F007550	Metagenome / Metatranscriptome	349	Y
F017148	Metagenome / Metatranscriptome	242	Y
F021787	Metagenome	217	N
F025853	Metagenome / Metatranscriptome	200	Y
F043619	Metagenome	156	Y
F057669	Metagenome / Metatranscriptome	136	Y
F066699	Metagenome / Metatranscriptome	126	Y
F089035	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000292210	F066699	N/A	MKIKLPIYWDFKSQEESEVIVNVPNAAAKKVLMAFLMRKDYDKRREWLIKNVPEIDLNIPKELYSTLL*
GBIDBA_1000292213	F043619	AGGAG	MTEQYWKREDGEVVAVGDMNEHHAKNVLRKMLKKSRQRGLDVLEMRDKISLISGMLDDIRSELL*
GBIDBA_1000292220	F006483	AGG	VLEYGILIEVMGRYIHENCTYTENHAEGTYTFTGPCVKTGKPYSVTIPGHELWDLNQGEPIMCLRSLKSDDREFVMTGLSPEGWDEVFA*
GBIDBA_1000292227	F057669	GGA	MTRITPSEDWPGFTFKFSNGWSVSMQQGEAHYCTVGKTAEVAVFDSKDNWYVYDEDSQTLEASEADTYVNGHLDADAVAKIISIISIISQEKIDIRTSK*
GBIDBA_1000292231	F025853	N/A	MKKFLINYIPAVHEGQVNSDDKAYFYRVEIDEQFANRSENDNSAGLAAKDTESGLWKRFRFDGIQSAVAL*
GBIDBA_1000292236	F021787	N/A	MTDMISCEEVFEADVNARAEFDVVCDEWLNEAILEQDAEEDLVECEGCGEQWYRPEGHTSDTVPECQKCYKNDPYWC*
GBIDBA_1000292240	F007550	N/A	MKKIILLLFLFSVSLNAASLKIVHVQQKTLPNGNAYGLESGIYFELTDLHPFVMYKLQYSEDLKKWKDLVHLGTYKMAMTSPYWTWKELPPHQCFFRIVEAW*
GBIDBA_1000292247	F089035	GAG	MTAYEMANKMRRKPKPNAVKRLEMAQDQARKSKRMVKEALETIRLSKPYKRPEDLPILTEWK*
GBIDBA_1000292248	F017148	N/A	MRDRTSNARKVVAPVEGHEGYRVVSAMMVRDLQQDDFTSPVEEDCGWFGYEGLCED*