Scaffold GBIDBA_10002848

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10002848
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34818
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002507	Metagenome	553	Y
F013575	Metagenome	270	Y
F043625	Metagenome	156	Y
F093984	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000284816	F043625	AGGA	MRGDVWVKENSNGEKVVCIDNGKFVAEKVIKPKAKYKIKQPKDYVIDGC*
GBIDBA_1000284827	F002507	N/A	MTYYLLLSGDSEKDALYETNVLGEESFETFYPSVGFMILHRIINQQPELLESLQILDEQKKSYTITKFLDKLEKWKIKKST*
GBIDBA_100028483	F013575	AGG	MNLNWFYLHVALALIVLVKDYNGTLEGSLDRFEQKIGLYTPPDSSYEEVPYYIPPIQEEVDSTFILPDSLQIKKEENENRN*
GBIDBA_100028489	F093984	AGGAG	MKKLRHKRFSIRMEVDDPFDYMGDLILQDFNHSGWRNWVIDYNNPNQLELFDIYEYQKYDRFGKLLDKKTGE*