Scaffold GBIDBA_10000924

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10000924
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37711
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (64.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006146	Metagenome / Metatranscriptome	380	Y
F010943	Metagenome	297	Y
F016675	Metagenome / Metatranscriptome	245	Y
F025858	Metagenome / Metatranscriptome	200	Y
F084346	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100009243	F084346	GAG	MTFHTIHPRYQVETSKEQSQLSDKQQAEDIYQKYVNQNVPCELFLNGKLQKEHKPSI*
GBIDBA_1000092441	F010943	AGGAG	MTSEELHEYLLKLKLTSEKTLAEYKKTIRQELDSYRANQPESYLLHRNYYQNQQGSNIVFYSFMEAENKPKIGEHEYKRLKISWSSLRKHNQDIEIRFCYYGDLSYTRFKLESEQEKWQSLCDDYGVTMYPFHKSFTGNEPNAWSIHRWYNLALWKDENLNILYLDADTYINGDIQLIFDNYKRDPIYGREEIGFRHDPNQGIRGEDPRYYLDLIDASIMAQGGKTEVHKYCLGVILLNHSVHKLFTPEVLSGYTDLLERIYAHQVFYPIPNFRIMDEFALWVLLSRWSMRTSLFGDQDVTQSFLEKKHETIFNPIVLHYTTKDEEKFADWKPEFSQLSRSQEEREDSVI*
GBIDBA_100009245	F016675	GGAG	MRTFEVDYETTIPPWHTGHEMYEAEDLDTAKAKFCSKHEAARIYRVSEVLYDERKR*
GBIDBA_1000092450	F025858	AGGAG	MLNNYGIQVLDHQDNKPDKDYMKKHRPPHREYPTRMYKNNGGWMVWLKCDIKGL*
GBIDBA_1000092454	F006146	N/A	ATLLIVNGLIFSWIAFTTPEPCPRKYRVTTENGGLLASPSDIHRYCELDYGGKFVLKDEYTDEQGDG*