Scaffold GBIDBA_10000244

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10000244
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 139034
• Total Scaffold Genes: 177
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 110 (62.15%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049214	Metagenome / Metatranscriptome	147	N
F052865	Metagenome / Metatranscriptome	142	Y
F061263	Metagenome / Metatranscriptome	132	N
F075433	Metagenome / Metatranscriptome	119	N
F083393	Metagenome / Metatranscriptome	113	Y
F086698	Metagenome	110	N
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000024415	F052865	AGAAG	MDLRGLGVVVLGLGLPSIATWMANSGVGSRVMSYVDMVPGMTTKYGKAVIAVGLTAGVSYLAAHFGAISAAEALTANMIAMGLVSVGLLKTMSLPVGQGLVDNLPAANFGGLAGSASYGYIGNYHEGVGAEMLPQPQSQQLFGVRANIF*
GBIDBA_1000024419	F049214	N/A	MANLNQGYRSGNAFGRLANVSYENGIAGDDIALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTVNVGITAVSGSVATDFDGTHGEALEQYGLASISAYYDLGTSTVDEADKTGNILAPDYDSGFITFKALEPYAGNLYHLCPTMPLQPKYMVKDTGDWHSLNAYPPYDTSSGGLPVGFKGDGTVANTEHIGSVSAKMYLKQPSGVSKHTLDEASDGESARATASETTLEGMSGFIDGEMSPLANPDWAFGMIIEHGEASLPAFRVVNDSDEYIVDGRCRLVGWKYKILELSQEQLATLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM*
GBIDBA_1000024421	F083393	GGAG	MKTVNKIFKWADKHPLATFAAGTLGIMYLFENYGSVNGLGQAVFKDSGSDMDNMFRKTGHTGAPAPGTGRWDTVMPSPSGPQVRYDADYHAQPMMMDPALEKMLAERGKRPVVQNASVRHGYETQVFAGIKNMKMW*
GBIDBA_1000024423	F106168	GAGG	MVKLKTKVTRFYKRNTMLSIGLIAAGTWYVLNQRGMAPALPLAPVKRASAPVARYAYDAYAPIRNEPYYNTSHFFGPADGDPVFYGF*
GBIDBA_1000024431	F075433	AGGAG	MSDEIVMAKVNAFAQELKEMGVEDFIFAAGSSSGLLAIQYDGDPRGVCFLAVTALMNAMFDSIDNDTGEITNGGREDYSE*
GBIDBA_1000024433	F086698	N/A	VASEDDSINSQIHGTTGSGNILPISAITQETATSLLFTRQGREDFASATHPRMVVPSHTIAKQLPLLCGLQDVVAQTGFLITADSSNTVTVMIGGQTVSATDGLPLVAGQSLMLDIVRMSKIYAIAVTDPASETCNLFWIDM*
GBIDBA_1000024480	F061263	AGGAG	MSVLLYTNTPITLCEKGVIICPICTQLKMMVNYPITEFRKGETIAYGHMMGVVEEKGVEEGQLILSDSNTDSPILWFPMHKLYNTRYRLDWIESGLETIAKYRLHDKYPIYFPAIGYYEEDGLVQEDVLELVQKHISDGEKDVMFVTHY*