Scaffold Abe_10043328

Overview

Basic Information

• Taxon OID: 3300001681
• Scaffold ID: Abe_10043328
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2549
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Abe, ELSC, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.111307
  • Long. (^o): -176.989014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047901	Metagenome / Metatranscriptome	149	Y
F076479	Metagenome	118	Y
F105323	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_100433284	F047901	N/A	MKYYRIRVIVQGELYIETIEAKDIWAAFKILIKRASDGLMKVKETVGFYQRKQVRITYEEVKDGDSGTGADEVRTGTSMGKESFNIAT*
Abe_100433285	F076479	N/A	MFGHICIENSGPFDKCWNIYHTPQIRYSSERTCMKAASDYLDGAQVYYRKQDVAVSELELYCIGINPINPV*
Abe_100433287	F105323	GAG	MNLKSKSTLFHTIIERVDQQLARMPLDDSEGAPLEDSTDLDMHIDAIKEMKITNAKGDVIHPFSTSVATQLVYDELTERREQSNGDKRH