Scaffold Abe_10032394

Overview

Basic Information

• Taxon OID: 3300001681
• Scaffold ID: Abe_10032394
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2971
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Abe, ELSC, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.111307
  • Long. (^o): -176.989014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015949	Metagenome	251	Y
F022409	Metagenome	214	Y
F034355	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_100323941	F015949	N/A	MPGKKYSFGQPSLMKAIEPGQKASIKFLGHPKVVDTEWGEKFSVDILLLSHPQYSINSPKGIKMTWQTNAKVIKDLVSMLEEKNTEFNKDYYDMTWELSVAEDGSYWLNA*
Abe_100323944	F022409	N/A	MAYTMKDVFFLDTKIDTTTSAGDGIATLDLSSYVDPIARGKAKGQGLAIYKVHWNVSVATGNDAPLSASNGEFRAGIISLSGAPSAAVGSASLNTDVMNNSNDLMISGMDFKGGGSAAGDPWPHVFLEPSTEVPYVVVRDQVLLAISIVTAMGAAAQVNVRLECATVTLDQATLNQLLRTQTV*
Abe_100323945	F034355	N/A	MDKKRFGPKLKMEGLPKASKAKVNILTLPVAIETPYDTGYGPDKNLKWEMEIELLEHPVQEVLGKMVWQTTAEVIRVEIMNLIKMVNNKPQAKENLKDLLKDLKECEWHILCDASGQLNLQEI*