Scaffold Abe_10029976

Overview

Basic Information

• Taxon OID: 3300001681
• Scaffold ID: Abe_10029976
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4597
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Abe, ELSC, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.111307
  • Long. (^o): -176.989014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F013596	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_100299765	F007837	N/A	LVSGLAVLPKISARNLSLQLNTVVQTKNTANPLIINYPAQYQSLSQSLLVDNQDAANPVTVVLNNTSQNTITLPAGAFRAFNDAWIEQVNCTGLSTNTQVTAQVAALRDIAPYGGGVTN*
Abe_100299769	F013596	GAG	MEAFAPFLTILATVLPISITAVLVARIYRKNAALDPKITNKLRKQQEDYIGEVERKNRSLQNKLNSMQKGPELSEMGDLDGVLPELIGQLDGILPKWATKFIKGQPDLINTVIEYAKNNPDKAKELIGKFTKIKPKAATTDQATMQGL*