Scaffold Abe_10025902

Overview

Basic Information

• Taxon OID: 3300001681
• Scaffold ID: Abe_10025902
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3331
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Abe, ELSC, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.111307
  • Long. (^o): -176.989014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002426	Metagenome	560	Y
F016735	Metagenome	245	Y
F042083	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_100259021	F016735	AGGA	MTDEIFALVWVLSFGLYLVIYTYWIPLRTQKKIESWLMSEESNETLLASLGVITNQIREQALVDFEEFMIPQGRKAAIDFWNGAMGNAAKELGKTEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPVIQ
Abe_100259024	F002426	AGGAG	MAGLQTRTYTLAGESLTAGTFASISQLLGSSQSTTNPEGMNKVVRISMSCSPDHTSATDGVSVFKFAGDGVSVQQIFSGPSWSNQAAGPLDGNNGMPVVVENSAGIFDIIAGNQIDFSVSCTTAETVDVAVSITYAA*
Abe_100259025	F042083	AGGAG	MARRMTIPHPSITGMASGLAVANYLNQGTSVGAGPTLSKGVIKSTLDGNLNAAFSDLSKNAVDLATSPGGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI*