Scaffold Abe_10021609

Overview

Basic Information

• Taxon OID: 3300001681
• Scaffold ID: Abe_10021609
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3646
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Abe, ELSC, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.111307
  • Long. (^o): -176.989014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015490	Metagenome	254	Y
F030294	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_100216091	F015490	N/A	TNPEGMTKVVRISMSCTPQMDSATDGISVFKFAGDGVSVQQIFSGPAWSCQAAGPLGGNSAGPVVMESSTGLFDIIPGNQIDFSVAVTTAETCDVAVSITYSA*
Abe_100216097	F030294	AGGAG	MARKMITPHPSITGMAAGFSLVDDLNKGDVVGQLLKGNLTGAVNTLSFNSQALIKTDPGRKALVQAVGIAAIGAWARKALPATKIGGSKFYFKI*