Scaffold Abe_10021222

Overview

Basic Information

• Taxon OID: 3300001681
• Scaffold ID: Abe_10021222
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3676
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Abe, ELSC, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.111307
  • Long. (^o): -176.989014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020469	Metagenome	224	Y
F023247	Metagenome	211	Y
F051571	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_100212223	F020469	AGGA	MEITTVSLMLYFAAWTVFYALLSKYIARLSKDEWVTWAKSRESDEELIEILEGVVDEIEDRIHTKLEQFQSSFFGSIGAASKKVDDATGQTTIKAITRENPIMGFVADMLMKRQGVDGLLNAVKGVEQGSDKPKTGRKLGL*
Abe_100212225	F051571	GAG	MVARRRKRSRRRAPRQFGINVIETGAALALLEQTQAGSAMKSFIAGDLNTGLTTLSAAAKRNKSTITKTLVGAFLAKAAVKSFSRGSPVLASLGPIKVRA*
Abe_100212228	F023247	AGGA	MTLSTGPTLNFFGDHVFAWSGQEALTAGVTTLLDFISPNRFYSVVTNVSFDYSGCSAGDALSWTIQGNGEPLHVAKFLIINAGVGPQFPNLYYTIPPNTGMKVQATGPTGSMTVVMEGKQVS*