Scaffold KiloMoana_10017355

Overview

Basic Information

• Taxon OID: 3300001680
• Scaffold ID: KiloMoana_10017355
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3514
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Kilo Moana, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.054108
  • Long. (^o): -176.133522
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030294	Metagenome	186	Y
F043695	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
KiloMoana_100173553	F043695	GGAG	LHSVVKWQSVRYRMTLSAGTGFNAVGREIFGFAPQIDFSAGSTGDDRTAFDFTSPMQLYMCELQPAINTSGMAANDILSFILTGNDLAIFQSKFALAVANEPIQAQLPTIKFILPSRTILKAVFNMQSGTAMVGSATCMFRGVSFA*
KiloMoana_100173556	F030294	AGGAG	MARRKMITPHPSITGMAAGFSLVDDLNKGDVVGQALKGNLSGAINTISANSQALIKTDAGRKSLVQAVGIAALGAWARKALPATKIGGTKLFFRI*