Scaffold KiloMoana_10013577

Overview

Basic Information

• Taxon OID: 3300001680
• Scaffold ID: KiloMoana_10013577
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4141
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Kilo Moana, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.054108
  • Long. (^o): -176.133522
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023247	Metagenome	211	Y
F038853	Metagenome	165	N
F051571	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
KiloMoana_1001357711	F023247	N/A	MTLSTGPTLNFFGDHVFAWSGLEALTGGGTTLLDFISPNKFYSVVTNVSFDYSGCSQGDALSWTIQGNEEALHVSKFLIETAGIGPQFPNLYYTIPPNTGIKVIAQGLSGACTVVVEGSVVQ*
KiloMoana_100135772	F023247	AGG	MTLSTGPTLNFFGDHVFAWSGQESLTAGVTTLLDFISPNRFYSVVTNVSFDYSGCSAGDALSWSIQGNGEALHVAKFLIIDAGVGPQFPNLYYTIPPNTGMKVQATGPTGSMTVVMEGKQVS*
KiloMoana_100135775	F051571	GAG	MVARRRKQSRRRAPRQFGINVIETGAALALLEQTSAGSAMKSFIAGDLNTGLTTLSKAAKSNKSAITKTLIGAFLAKAAVKSFSRGSPVLASLGPIKVRA*
KiloMoana_100135776	F038853	GAG	MKSNKFHFGATSVMREVPPGKTAVIQFNGKLEEIETEWGDKMKYPILLFSHPSYESISKEGIETVWQSNSQASRDLAKALEQGIKELSEAFHKNKWELTRTEEGTYFLDVIL*