Scaffold KiloMoana_10011785

Overview

Basic Information

• Taxon OID: 3300001680
• Scaffold ID: KiloMoana_10011785
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4548
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Kilo Moana, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.054108
  • Long. (^o): -176.133522
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014552	Metagenome	262	Y
F015490	Metagenome	254	Y
F016735	Metagenome	245	Y
F042083	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
KiloMoana_1001178510	F015490	N/A	MSCSPDHTSATDGVSVFKFAGDGVSVQQIFAGPSWSNQAAGPLDGNNGMPVVIENASGIFDIIAGNQIDFSVSCTTAETVDVAVSITYSA*
KiloMoana_100117854	F042083	AGGAG	MARRMTIPHPSITGMASGLAVANYLNQGTSVGAGPTLSKGVIKSTLDGNLNAAFSDLSQNAVNLATSPGGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI*
KiloMoana_100117855	F014552	N/A	MSLDKDKKYSLGTPSLMRGLDKGQECEVKFLTDPKPVETEHGSKFDIQVQLLSHPHESYSSLPKEGRRLTWRTNCHVVRVTVMDLFNNNTEDFQKDWYDCTWTISCKEDGNIWIDA*
KiloMoana_100117856	F016735	GGA	MTDEIFALVWVLSFGLYLVIYTYWIPLRTQKKIESWLISEESNETLLASLGVITNQIREQALVDFEEFMIPQGRKAAIDFWNGAMGNAAKKLGDTEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPVISKAAKNQDKPKVTKLVHGKFGFD*