NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TahiMoana_1028452

Scaffold TahiMoana_1028452


Overview

Basic Information
Taxon OID3300001679 Open in IMG/M
Scaffold IDTahiMoana_1028452 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1894
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameTahi Moana, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.682131Long. (o)-176.183363Alt. (m)Depth (m)2230
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002100Metagenome593Y
F002150Metagenome589Y

Sequences

Protein IDFamilyRBSSequence
TahiMoana_10284521F002100N/AMSFRPALIKPVYDVSNFGTGVTLPLNCLTGSTTTLTPSTATFVQVLEDSKVPIDEVDMFITDSDKMALIHAGNDIDYDTTFEWSVDMSNQAYQITMNFAVAMKVSAYTSGNFAIDNVQIIIKQVGGGEGEYVYVNKIIDPGMANMVSVTEQVAIINFSTRVSAKVADKPLTFQIKVNTSSGVGTYQTGIVPLFCYFGAAVPKTWTTSSVLLHIHADLAHAFPIFRDEDNMNMLDTGIGV*
TahiMoana_10284523F002150AGGAGMVSLTAAQVGVGVARKGKEKVGELYQEKFGYNFVDLVTKLALFYIVAFLIAKYMEAVIYFQGGLATIAGFFGIKFAQADQLPKQWVELFVDTNQQTFTSTPTAPGQFNPPGWDKPYDYGSVQHQEAEPYMFPQKEVKYKFWDLINAIVIFYIGWEAYKYYDNASKDPNKKVDLLTLAIFSLLMLAVGVLSFSKFLGRFSFNRFQED*
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