Scaffold TahiMoana_1023461

Overview

Basic Information

• Taxon OID: 3300001679
• Scaffold ID: TahiMoana_1023461
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2177
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Tahi Moana, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.682131
  • Long. (^o): -176.183363
  • Depth (m): 2230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002426	Metagenome	560	Y
F042083	Metagenome	159	Y
F052279	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
TahiMoana_10234611	F052279	GGA	MTDELFALVWVLSFGLYLLIYTYWIPLRTQKKIESWLISEESNETLLASLGVITNQIREQALVDFEEFMI
TahiMoana_10234615	F002426	AGGAG	MSGLQTRTYTLAGSALTAGTFTSISQLMGSSQSTTNPEGMNRVVRISLSCSPDHTSATDGVSVFKFAGDGVSVQQIFAGPSWSNQAVGPLDGNDGQPVVIENSAGIFDIIAGNQIDFSVSCTTAETVDVAVSITYAA*
TahiMoana_10234616	F042083	AGGAG	MARRMTIPHPSITGMASGLAVANYLNQGTSVGAGVLRTGGVIKDTLDGNLNSAFSSLSKNAVDLATSPGGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI*