Scaffold TahiMoana_1022350

Overview

Basic Information

• Taxon OID: 3300001679
• Scaffold ID: TahiMoana_1022350
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2259
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Tahi Moana, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.682131
  • Long. (^o): -176.183363
  • Depth (m): 2230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y
F100046	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
TahiMoana_10223501	F100046	N/A	RKTLVTASLVAMLGAFARSRFPQLKLGGSKLYFRI*
TahiMoana_10223504	F005551	N/A	MTLAASKSVSRAKGGNIYGWSGSKALSASAVTLLDYTNPPAFYLTRITLGIDWSGISATEFISYTINVDGTALFVEKTIINADNLGTQPKMFEFMIPPNSTVKVQALQSNSNGFITCILTGYRI*
TahiMoana_10223506	F005319	N/A	MTDAAFYLFALISFVIYFIIYTYYVPLKTQQKIESWLKSSESDETLLMSLDVITKKIREQMLIDFEEFMLPQARESLQKFWSGAMGNAAKELKGSEEGSNLSLLHNITQDLSGQPWYVQALASKMLPMITEAVKTQPKRTSDATIGMG