Scaffold TahiMoana_1018889

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TahiMoana_1018889

Scaffold TahiMoana_1018889

Overview

Basic Information
Taxon OID	3300001679 Open in IMG/M
Scaffold ID	TahiMoana_1018889 Open in IMG/M
Source Dataset Name	Black smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2556
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Tahi Moana, Lau Basin, Pacific Ocean
Coordinates	Lat. (^o)	-20.682131	Long. (^o)	-176.183363	Alt. (m)		Depth (m)	2230
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046089	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
TahiMoana_10188894	F046089	AGGTGG	LPSVIQGFVVTTKPKDVTLESFPTVDHIATGATTTIVYPNSYKGVAISAAIINQDGTNACTISLNGSTSFSLSSGAQFNVNDQNIVSIKIIAGAAGGVDVVAQVAPTLLTTERSRFTFERG*

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