Scaffold TahiMoana_1016116

Overview

Basic Information

• Taxon OID: 3300001679
• Scaffold ID: TahiMoana_1016116
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5605
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Tahi Moana, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.682131
  • Long. (^o): -176.183363
  • Depth (m): 2230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F010737	Metagenome	300	N

Sequences

Protein ID	Family	RBS	Sequence
TahiMoana_10161161	F005319	N/A	MTDQQFLLIWIFSFFLYFAIYTIWIPLKTQKKIESWLKSAESDETLLMSLDVITKKIREQMLIDFEEFMLPQARESLQKFWSGAMGNAAKELKGSEEGSNLSLLHNITQDLSGQPWYVQALASKMLPMITEAVKTQPKRTSDAILGMGLQK*
TahiMoana_101611611	F005551	N/A	MTLAASKSVSRAKGGNIYGWSGSQALSASAVTLLSYTNPSAFYLTRITLGVDWTGISATEFISYTINVDGTALFVEKTIVTADNIGTQPKMFEFMIPPNSTVKVQALQSNSNGFITCILTGYRI*
TahiMoana_10161163	F005551	GAG	MTLGPSKSVSRAKDGKIYGWSGSYALTSSAVTLLDYTNPSAFYLTRVTLGIDWSSISAGEILSYTINVDDQPLFVEKLVVLINNIGIQPKMFEFIIPPNSTVKIQATESANNGSISCILTGYRV*
TahiMoana_10161165	F010737	N/A	MVTTITRTFDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSQRISRIDVAVDAADTKGFVLACRLLGSNMSEQNLTLAGSCGDVADAGGTPQFNMIPTNFSVAGVNNIDLQVAFQFSSGTPTASSLSVTLYFE*
TahiMoana_10161166	F005580	AGGAG	MKAVPHPSITGMASGLAIAAYLNAGETVTGSFGKTSVTEGVIKDITDGQLGAAFNTLSGNAIDMIGSDAGRKTLVTASLVAMAGAFARSRFPQLKLGGSKLYFRI*
TahiMoana_10161169	F005319	AGGA	MTDAAFYLFALISFAIYFIIYTYYVPLKTQQKIESWLKSSESDKTLLMSLDVITKKIREQMLIDFEEFMLPQARESFQKFWTGAMGHAAKELKNSDQGNFSLMHSITKELENQPYYIQMLGAKLLPIITEAAKKQPIGKSVAEIGMGLGK*