Scaffold TahiMoana_1014516

Overview

Basic Information

• Taxon OID: 3300001679
• Scaffold ID: TahiMoana_1014516
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3103
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Tahi Moana, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.682131
  • Long. (^o): -176.183363
  • Depth (m): 2230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F001992	Metagenome	607	Y

Sequences

Protein ID	Family	RBS	Sequence
TahiMoana_10145164	F000704	AGGTGG	MPHLETDIQPSKVKSVSVYNVGDYGNDLFLPFTDVGLTETSITFSTAVLTRDTDDSNQPMDDFPAVYSDTDTGILLNEGNDSAFSQTYSYNPDMTAIIYALHLHFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSGAANLTATGTSLHIFQQDVVETILVRKGNPIDILVELITVTTGTNTRQEGIVNLAPNIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ*
TahiMoana_10145165	F000730	N/A	LVSELIPPEIVPIVWFACISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLISNAPRILHEIDKQIAEQKASGVSDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI*
TahiMoana_10145166	F001992	AGG	LVVQKLLLEEGLRRTKKYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATIQGGSWLNIVAGFFNIKFPDTLPEWLTKLFTTGWNGIAFWQILQITAILLVIVEYMQYDRMLKEKDQKPNATSQAVFLIIALAIPATCREI