 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001679 Open in IMG/M |
| Scaffold ID | TahiMoana_1004365 Open in IMG/M |
| Source Dataset Name | Black smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7175 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (42.86%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tahi Moana, Lau Basin, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -20.682131 | Long. (o) | -176.183363 | Alt. (m) | Depth (m) | 2230 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F001922 | Metagenome | 617 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| TahiMoana_100436510 | F000730 | GAG | LVSEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKEQGSIHTDSQIDDLINNAPRILNEINKQIKEQELSGVTPEQMKGLLQKKQMLELVTNNAEVINIIGKPIIKKLLGLVKSL* |
| TahiMoana_100436511 | F000704 | GGTGG | MPHLNGEIQPSNVKSLAVYDVASYGTDLFLPLTDVGLTETALTFSGVTMTRDTSDSNQPLDSFPRVYSDTDSGLLLNEGNDTAFNQTYTLDPDMTAVIYKFSLNFCAVLTCSAYTNGGLNIGGLHIKISERSSNDRLLYENTFQSGAATLAATGTSMHWFTQDIVETIKVRKGNPIDIQLNLITVVTGTNTRQEGYAPVAPYLKTAVLKSFYETGISLHLHPDLSHADGVFKYKKERVSLLGQ* |
| TahiMoana_10043659 | F001922 | N/A | MVLQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINSYFRATISGGIWLNSLASLFGVKFPDTLPEWTVKLFTTGYHNITFWQVVQVISVLIIVVEYMQYDRMLKEKGESPNATSSAVFLMIGLGISLVTFPQIIQKFKEMRILSKAPRTDVTKGFGGEPL* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |