Scaffold Mariner_1009023

Overview

Basic Information

• Taxon OID: 3300001678
• Scaffold ID: Mariner_1009023
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Mariner, Lau Basin, Pacific Ocean -IDBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3448
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Mariner, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Mariner, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.180059
  • Long. (^o): -176.601242
  • Depth (m): 1900

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023247	Metagenome	211	Y
F038853	Metagenome	165	N
F051571	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Mariner_10090231	F038853	N/A	GKTAVIKFNGKMSIVDTEWGEKMKYPILLFSHPSYESISKEGIETTWQSNSQASRDLATALEQGIKDLSKAFHENKWELTRTEEGTYFLDVIL*
Mariner_10090236	F023247	AGTAGG	MTLSTGPSLNFFGDHMFAWSGQESLTAGGVTLLDFISPNRFYTVITNVSFDYSGCSQGDALSWSIQGNEEALHVSKFLIEAAGIGPQFPNLYYTIPPNTGMKVQAQGPTGLITVVLEGKQVK*
Mariner_10090239	F051571	GAG	MVRRRNSRSRRRTRTFGINVIETGAALALMDQVDAGKAMQSLLAGNLNQGFGILSAAAKKNKSLITKTLVSAFVAKAAVKSFSRGSPVLASLGPIKVRA*