Scaffold Mariner_1008327

Overview

Basic Information

• Taxon OID: 3300001678
• Scaffold ID: Mariner_1008327
• Source Dataset Name: Black smokers hydrothermal plume microbial communities from Mariner, Lau Basin, Pacific Ocean -IDBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3613
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Mariner, Lau Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Mariner, Lau Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.180059
  • Long. (^o): -176.601242
  • Depth (m): 1900

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023247	Metagenome	211	Y
F051571	Metagenome	144	Y
F096262	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Mariner_10083271	F096262	N/A	TCSGFKLTGTALQEGDAVFMGPSITGPASGGTGVTQGNVQTKTALGVTSGNTLDIQVAVTTAAVIDAVCEIQFE*
Mariner_10083273	F023247	N/A	MTLSTGPSLNFYGERMFAWSGLEALTAGGTILLDFISPNRFYSVVTNVSFDYSGCSAGDVLSWTLQGNEEALHVSKFLIIDAGIGPQFPNLYYTIPPNTGMKVLAQGPTGLMTVVLEGKEVE*
Mariner_10083279	F051571	N/A	MVRRRRARPRKRSRSFGINVIETGAALALLEQTNAGSAMKSFLAGDLNTGLTTLSKSAKSNKQAITKTLVGAFLAKAAVRSFSRGSPVLASLGPIKVRA*