Scaffold TuiMalila_1032445

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold TuiMalila_1032445

Scaffold TuiMalila_1032445

Overview

Basic Information
Taxon OID	3300001676 Open in IMG/M
Scaffold ID	TuiMalila_1032445 Open in IMG/M
Source Dataset Name	Black smokers hydrothermal plume microbial communities from Tui Malila, Lau Basin, Pacific Ocean
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1122
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tui Malila, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Tui Malila, Lau Basin, Pacific Ocean
Coordinates	Lat. (^o)	-21.99002	Long. (^o)	-176.568744	Alt. (m)		Depth (m)	2000
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069480	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
TuiMalila_10324454	F069480	N/A	IELIDRIYILESRNNIKRVEGNAGQILDEASKNKPYNTVKTVFFSVFKPVVFL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.