Scaffold JGI12053J15887_10268407

Overview

Basic Information

• Taxon OID: 3300001661
• Scaffold ID: JGI12053J15887_10268407
• Source Dataset Name: Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 842
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011570	Metagenome / Metatranscriptome	289	Y
F011923	Metagenome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12053J15887_102684071	F011923	AGGAG	MRMYVVLFLAAVFALFPLDGAAGEKQLTDVKELAGSWRGWVTGEMGQERATMIVQADGSY
JGI12053J15887_102684072	F011570	AGGAGG	MHVRRGVIVLFWWFMIVSQYPGGTLSAATQGPFGTQAQCEWGRQQVGVTTGLRGGQGVGWGLSPCWSDGR*