Scaffold JGI12053J15887_10014560

Overview

Basic Information

• Taxon OID: 3300001661
• Scaffold ID: JGI12053J15887_10014560
• Source Dataset Name: Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4357
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029226	Metagenome	189	N
F045330	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12053J15887_100145605	F029226	GAGG	MSEQKEKDLFPQNARLAQLSDSLYGSPSELDAREARELLRRAGIDPEDVKARLYRRFDALAKEYAAAGRPVPALLKQALSDLRPGVPGSPKERTLVRQARAAIRSVIDHAXRXQERLARLPRVTLATAYRNKKELSERDKKLLDDLAEDLLKRNNRSRPKDGR*
JGI12053J15887_100145606	F045330	GAGG	LEAQQSLDFEELAHRLTAFGLRTFNEFGLGGRDSTVAGVGLSVDDFVSAVLVEYVEGKLQHQASRGDLFSLLATALRNDIIDSLRKAAHAHEESRSSVPAEWDAHAVPLSLDELPGSTIDFAGSIDEERYGERARTAFAGEPELAEVVRAVLELNLYKPREIAAELGITAAEVQNRKKRLQRQLIDHNLVERKTA*