Scaffold JGI12053J15887_10008081

Overview

Basic Information

• Taxon OID: 3300001661
• Scaffold ID: JGI12053J15887_10008081
• Source Dataset Name: Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5680
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005577	Metagenome / Metatranscriptome	396	Y
F058850	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12053J15887_100080813	F058850	GGAGG	MDAGRDFERMQDYVVGRLSEDEHRAFEDRLVRDPALVHELEQSLRLGEGLHQLRAQGYFDQAVSRARGSRIWLPLLAAAAIAGLALFLWLQPSTGAAPVLTASLESRIAGVAPSITAHFTFVAVREGSTPDLDLPSGGVIEFRAAPATHLTASRYRMTLVRQDEGGSSKPVGAVAGLALSADGYLHGYADASRLGPGSYMLRIESDAETPGTAEVFPFNLRARGARPTP*
JGI12053J15887_100080814	F005577	N/A	MARSVPSYDPGRSVSRVNVAVAVAEDARGRIYEIAAACRALGLEHTSTLADVGVLTGSVEFHDLPKLRAIPDVVAVELER*